DNA and Genetics

  1. Genomics and Modern Genetics
    1. Genome Organization
      1. Genome Size Variation
        1. C-Value Paradox
          1. Repetitive DNA
          2. Gene Density
            1. Coding Sequences
              1. Intergenic Regions
              2. Repetitive Elements
                1. Transposable Elements
                  1. Tandem Repeats
                    1. Interspersed Repeats
                  2. Genome Sequencing
                    1. Sequencing Technologies
                      1. Sanger Sequencing
                        1. Next-Generation Sequencing
                          1. Illumina Sequencing
                            1. PacBio Sequencing
                              1. Oxford Nanopore
                              2. Third-Generation Sequencing
                              3. Genome Assembly
                                1. Shotgun Sequencing
                                  1. Clone-by-Clone Sequencing
                                    1. Assembly Algorithms
                                    2. Genome Annotation
                                      1. Gene Prediction
                                        1. Functional Annotation
                                          1. Comparative Annotation
                                        2. Functional Genomics
                                          1. Gene Expression Analysis
                                            1. Microarrays
                                              1. RNA Sequencing
                                                1. Single-Cell RNA-Seq
                                                2. Proteomics
                                                  1. Protein Identification
                                                    1. Protein Quantification
                                                      1. Protein Interactions
                                                      2. Metabolomics
                                                        1. Metabolite Profiling
                                                          1. Metabolic Pathways
                                                        2. Comparative Genomics
                                                          1. Genome Comparisons
                                                            1. Synteny Analysis
                                                              1. Ortholog Identification
                                                                1. Phylogenetic Analysis
                                                                2. Evolution of Genomes
                                                                  1. Gene Duplication
                                                                    1. Genome Rearrangements
                                                                      1. Horizontal Gene Transfer

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                                                                  12. Genetic Technologies and Applications