Biomedical Imaging and Instrumentation

  1. Medical Image Processing and Analysis
    1. Image Representation and Formats
      1. Digital Image Fundamentals
        1. Pixel and Voxel Representation
          1. Bit Depth and Dynamic Range
            1. Spatial and Intensity Resolution
            2. Medical Image Formats
              1. DICOM Standard
                1. DICOM Header Information
                  1. DICOM Services
                    1. DICOM Networking
                    2. Other Formats
                      1. NIfTI
                        1. Analyze
                          1. JPEG and TIFF
                        2. Image Coordinate Systems
                          1. Patient Coordinate System
                            1. Image Coordinate System
                              1. World Coordinate System
                            2. Image Pre-processing
                              1. Noise Reduction
                                1. Linear Filters
                                  1. Mean Filter
                                    1. Gaussian Filter
                                    2. Non-linear Filters
                                      1. Median Filter
                                        1. Bilateral Filter
                                        2. Morphological Filters
                                        3. Intensity Correction
                                          1. Bias Field Correction
                                            1. N3 Algorithm
                                              1. N4ITK Algorithm
                                              2. Intensity Normalization
                                                1. Histogram Matching
                                                  1. Z-score Normalization
                                                2. Geometric Corrections
                                                  1. Distortion Correction
                                                    1. Motion Correction
                                                  2. Image Enhancement
                                                    1. Contrast Enhancement
                                                      1. Contrast Stretching
                                                        1. Histogram Equalization
                                                          1. Global Histogram Equalization
                                                            1. Adaptive Histogram Equalization
                                                            2. Gamma Correction
                                                            3. Sharpening
                                                              1. Unsharp Masking
                                                                1. Laplacian Sharpening
                                                                2. Edge Enhancement
                                                                  1. Gradient-Based Methods
                                                                    1. Laplacian of Gaussian
                                                                  2. Image Segmentation
                                                                    1. Thresholding
                                                                      1. Global Thresholding
                                                                        1. Adaptive Thresholding
                                                                          1. Otsu's Method
                                                                          2. Region-Based Methods
                                                                            1. Region Growing
                                                                              1. Region Splitting and Merging
                                                                                1. Watershed Algorithm
                                                                                2. Edge-Based Methods
                                                                                  1. Edge Detection
                                                                                    1. Sobel Operator
                                                                                      1. Canny Edge Detector
                                                                                        1. Laplacian of Gaussian
                                                                                        2. Active Contours
                                                                                          1. Snakes
                                                                                            1. Level Sets
                                                                                          2. Clustering Methods
                                                                                            1. K-Means Clustering
                                                                                              1. Fuzzy C-Means
                                                                                              2. Advanced Segmentation
                                                                                                1. Graph Cuts
                                                                                                  1. Random Walker
                                                                                                    1. Deep Learning Segmentation
                                                                                                  2. Image Registration
                                                                                                    1. Registration Framework
                                                                                                      1. Fixed and Moving Images
                                                                                                        1. Transformation Models
                                                                                                          1. Similarity Metrics
                                                                                                            1. Optimization Methods
                                                                                                            2. Transformation Types
                                                                                                              1. Rigid Transformations
                                                                                                                1. Translation and Rotation
                                                                                                                2. Affine Transformations
                                                                                                                  1. Scaling and Shearing
                                                                                                                  2. Non-rigid Transformations
                                                                                                                    1. B-Spline Deformation
                                                                                                                      1. Demons Algorithm
                                                                                                                    2. Registration Methods
                                                                                                                      1. Landmark-Based Registration
                                                                                                                        1. Intensity-Based Registration
                                                                                                                          1. Mutual Information
                                                                                                                            1. Cross-Correlation
                                                                                                                            2. Feature-Based Registration
                                                                                                                            3. Applications
                                                                                                                              1. Multi-modal Registration
                                                                                                                                1. Temporal Registration
                                                                                                                                  1. Atlas-Based Registration
                                                                                                                                2. Image Visualization
                                                                                                                                  1. 2D Visualization
                                                                                                                                    1. Windowing and Leveling
                                                                                                                                      1. Color Mapping
                                                                                                                                        1. Multi-planar Reconstruction
                                                                                                                                        2. 3D Visualization
                                                                                                                                          1. Surface Rendering
                                                                                                                                            1. Marching Cubes Algorithm
                                                                                                                                            2. Volume Rendering
                                                                                                                                              1. Ray Casting
                                                                                                                                                1. Texture-Based Rendering
                                                                                                                                                2. Maximum Intensity Projection
                                                                                                                                                  1. Minimum Intensity Projection
                                                                                                                                                  2. Advanced Visualization
                                                                                                                                                    1. Virtual Reality
                                                                                                                                                      1. Augmented Reality
                                                                                                                                                        1. Interactive Visualization
                                                                                                                                                      2. Quantitative Image Analysis
                                                                                                                                                        1. Feature Extraction
                                                                                                                                                          1. Morphological Features
                                                                                                                                                            1. Area and Volume
                                                                                                                                                              1. Shape Descriptors
                                                                                                                                                                1. Texture Features
                                                                                                                                                                2. Intensity Features
                                                                                                                                                                  1. Statistical Moments
                                                                                                                                                                    1. Histogram Features
                                                                                                                                                                    2. Spatial Features
                                                                                                                                                                      1. Distance Maps
                                                                                                                                                                        1. Spatial Relationships
                                                                                                                                                                      2. Shape Analysis
                                                                                                                                                                        1. Boundary Analysis
                                                                                                                                                                          1. Skeleton Analysis
                                                                                                                                                                            1. Shape Matching
                                                                                                                                                                            2. Texture Analysis
                                                                                                                                                                              1. Gray-Level Co-occurrence Matrix
                                                                                                                                                                                1. Local Binary Patterns
                                                                                                                                                                                  1. Wavelet Features
                                                                                                                                                                                  2. Statistical Analysis
                                                                                                                                                                                    1. Descriptive Statistics
                                                                                                                                                                                      1. Hypothesis Testing
                                                                                                                                                                                        1. Correlation Analysis
                                                                                                                                                                                          1. Machine Learning Applications

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                                                                                                                                                                                      10. Advanced Topics and Applications