UsefulLinks
Biology
Genetics and Genomics
Statistical Genetics and Genomics
1. Foundations of Statistical Genetics
2. Population Genetics Principles
3. Quantitative Genetics
4. Linkage Analysis and Gene Mapping
5. Association Studies
6. Genome-Wide Association Studies
7. Post-GWAS Analysis
8. Next-Generation Sequencing in Genetics
9. Advanced Statistical Methods
10. Specialized Applications
11. Computational Tools and Resources
11.
Computational Tools and Resources
11.1.
Software Packages
11.1.1.
R Packages for Genetics
11.1.1.1.
genetics
11.1.1.2.
SNPassoc
11.1.1.3.
GenABEL
11.1.1.4.
GWAS Tools
11.1.2.
Python Libraries
11.1.2.1.
PyVCF
11.1.2.2.
scikit-allel
11.1.2.3.
pandas-plink
11.1.3.
Specialized Software
11.1.3.1.
PLINK
11.1.3.2.
GCTA
11.1.3.3.
BOLT-LMM
11.1.3.4.
SAIGE
11.2.
Databases and Resources
11.2.1.
Genotype Databases
11.2.1.1.
dbSNP
11.2.1.2.
1000 Genomes Project
11.2.1.3.
gnomAD
11.2.1.4.
UK Biobank
11.2.2.
Phenotype Databases
11.2.2.1.
GWAS Catalog
11.2.2.2.
ClinVar
11.2.2.3.
OMIM
11.2.2.4.
PhenoScanner
11.2.3.
Functional Databases
11.2.3.1.
Ensembl
11.2.3.2.
UCSC Genome Browser
11.2.3.3.
GTEx Portal
11.2.3.4.
ENCODE
11.3.
High-Performance Computing
11.3.1.
Cluster Computing
11.3.1.1.
Job Scheduling
11.3.1.2.
Parallel Processing
11.3.1.3.
Memory Management
11.3.2.
Cloud Computing
11.3.2.1.
AWS for Genomics
11.3.2.2.
Google Cloud Platform
11.3.2.3.
Data Security Considerations
11.3.3.
Workflow Management
11.3.3.1.
Nextflow
11.3.3.2.
Snakemake
11.3.3.3.
WDL
11.4.
Data Management
11.4.1.
File Formats
11.4.1.1.
VCF Format
11.4.1.2.
PLINK Format
11.4.1.3.
BGEN Format
11.4.1.4.
Hail MatrixTable
11.4.2.
Data Storage
11.4.2.1.
Compression Methods
11.4.2.2.
Indexing Strategies
11.4.2.3.
Backup Procedures
11.4.3.
Data Sharing
11.4.3.1.
FAIR Principles
11.4.3.2.
Privacy Protection
11.4.3.3.
Consent Management
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10. Specialized Applications
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1. Foundations of Statistical Genetics