Biotechnology

  1. Bioinformatics and Computational Biology
    1. Biological Databases
      1. Sequence Databases
        1. GenBank
          1. EMBL
            1. DDBJ
              1. UniProt
              2. Structure Databases
                1. Protein Data Bank
                  1. SCOP
                    1. CATH
                    2. Functional Databases
                      1. Gene Ontology
                        1. KEGG Pathways
                          1. Reactome
                        2. Sequence Analysis
                          1. Sequence Alignment
                            1. Pairwise Alignment
                              1. Global Alignment
                                1. Local Alignment
                                  1. Scoring Matrices
                                  2. Multiple Sequence Alignment
                                    1. Progressive Methods
                                      1. Iterative Methods
                                        1. Profile-based Methods
                                      2. Database Searching
                                        1. BLAST Algorithms
                                          1. FASTA Methods
                                            1. Specialized Search Tools
                                            2. Phylogenetic Analysis
                                              1. Tree Construction Methods
                                                1. Molecular Evolution
                                                  1. Species Relationships
                                                2. Genomics and Proteomics
                                                  1. Genome Assembly
                                                    1. Sequencing Strategies
                                                      1. Assembly Algorithms
                                                        1. Quality Assessment
                                                        2. Gene Prediction
                                                          1. Ab initio Methods
                                                            1. Homology-based Methods
                                                              1. RNA-seq Evidence
                                                              2. Functional Annotation
                                                                1. Protein Function Prediction
                                                                  1. Pathway Analysis
                                                                    1. Comparative Genomics
                                                                    2. Proteomics Analysis
                                                                      1. Mass Spectrometry Data
                                                                        1. Protein Identification
                                                                          1. Quantitative Proteomics
                                                                        2. Systems Biology
                                                                          1. Network Analysis
                                                                            1. Protein-protein Interactions
                                                                              1. Gene Regulatory Networks
                                                                                1. Metabolic Networks
                                                                                2. Mathematical Modeling
                                                                                  1. Kinetic Models
                                                                                    1. Boolean Networks
                                                                                      1. Stochastic Models
                                                                                      2. Omics Integration
                                                                                        1. Multi-omics Approaches
                                                                                          1. Data Integration Methods
                                                                                            1. Biomarker Discovery

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                                                                                        4. Regulatory and Ethical Considerations

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                                                                                        1. Foundations of Biotechnology